核酸测序云文献

简化基因组

1.Xinpeng Q,Man-Wah L,et al.Identification of a novel salt tolerance genein wild soybean by whole-genome sequencing DOI: 100.1038/ncomms5340 NATURE COMMUNICATIONS

2.Jun W, Zhiwen W, Zebin S, et al. The genome of the pear (Pyrus bretschneideri Rehd.) DOI:10.1101/gr.144311.112 Genome Research

3.Qixiang Z,Wenbin C,Lidan S, et al.The genome of Prunus mume‍ DOI: 10.1038/ncomms2290 NATURE COMMUNICATIONS

4.Huaan Y, Ye T,Zequn Z,et al. Draft Genome Sequence, and a Sequence-Defined Genetic Linkage Map of the Legume Crop Species Lupinus angustifolius L.   doi:10.1371/journal.pone.0064799 Plos One

5.Huaan Y,Ye T, Zequn Z, et al. Application of next-generation sequencing for rapid marker development in molecular plant breeding: a case study on anthracnose disease resistance in

Lupinus angustifolius L.   doi:10.1186/1471-2164-13-318 BMC Genomics

6.Pei X, Shizhong X,Xiaohua W,Ye T, et al. Population genomic analyses from low-coverage RAD-Seq‍data: a case study on the non-model cucurbit bottle gourd   doi: 10.1111/tpj.12370 Plant Journal

7.Huaan Y, Ye T,Zequn Z, et al. Rapid development of molecular markers by next-generation

sequencing linked to a gene conferring phomopsis stem blight disease resistance for marker-assisted selection in lupin (Lupinus angustifolius L.) breeding DOI 10.1007/s00122-012-1997-1 Theor Appl Genet

8.Xiangyang X, Liang Z, Ye T, et al. Pinpointing genes underlying the quantitative trait loci

for root-knot nematode resistance in palaeopolyploid soybean by whole genome resequencingdoi 10.1073/pnas.1222368110 PNAS

9.Yong H, Luting S, Ping Z, Bo Z,Ye T,et al. Single-Cell Exome Sequencing andMonoclonal Evolution of a JAK2-Negative Myeloproliferative NeoplasmDOI 10.1016/j.cell.2012.02.028 Cell

10.Xun X, Yong H, Xuyang Y, et al. Single-Cell Exome Sequencing Reveals Single-Nucleotide Mutation Characteristics of a Kidney TumorDOI 10.1016/j.cell.2012.02.025    Cell

11.Ning Z, Linan Z, Ye T, et al Construction of a high density SNP linkage map of kelp (Saccharina japonica) by sequencing Taq I site associated DNA and mapping of a sex determining locus‍ DOI 10.1186/s12864-015-1371-1 BMC Genomics

12.Zhengyan F, Yanfei M, Nanfei X,et al. Multigeneration analysis reveals the inheritance,

specificity, and patterns of CRISPR/Cas-induced gene modifications in Arabidopsis doi/10.1073/pnas.1400822111   PNAS

转录组调控方向

1.Minjie C, Xue L, Yan Z, et al. An ABA-mimicking ligand that reduces water loss andpromotes drought resistance in plants promotes drought resistance in plants   doi:10.1038/cr.2013.95 Cell Research

表观遗传方向

1.Mingguang L, Honggui L, Kun L, et al Arabidopsis EDM2 promotes IBM1 distal polyadenylation and regulates genome DNA methylation patterns‍ doi/10.1073/pnas.1320106110 PNAS

2.Heng Z, Ze-Yang M, Liang Z, et al.DTF1 is a core component of RNA-directed DNAmethylation and may assist in the recruitment of Pol IV doi/10.1073/pnas.1300585110 PNAS

3.Qi L, Xiaokang W, Han S, et al. Regulation of Active DNA Demethylation by a Methyl-CpG-Binding Domain Protein in Arabidopsis thaliana doi:10.1371/journal.pgen.1005210 Plos Genetics

宏基因组方向

1.Junjie Q, Ruiqiang L, Jeroen R, et al.A human gut microbial gene catalogue established by metagenomic sequencingdoi:10.1038/nature08821 NATURE

2.Junjie Q,Yingrui L,Zhiming C,et al. A metagenome-wide association study of gut microbiota in type 2 diabetes   doi:10.1038/nature11450 NATURE

3.H Bjørn N, Mathieu A,et al. Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes metagenomicdoi:10.1038/nbt.2939 NATURE BIOTECHNOLOGY

4.Junhua L, Huijue J, et al   An integrated catalog of reference genes in the human gut microbiome doi:10.1038/nbt.2942 NATURE BIOTECHNOLOGY

5.Jens Roat K, Shinichi S, Junhua L, et al. MOCAT: A Metagenomics Assembly and Gene PredictionToolkit doi:10.1371/journal.pone.0047656 Plos One

6.Zhong W, Tianjie Y, Ville-Petri F,el al. Trophic network architecture of root-associated bacterial communities determines pathogen invasion and plant healthDOI: 10.1038/ncomms9413 NATURE COMMUNICATIONS