Creates a subsampled OTU table(OTU表抽平)
分析模块通过随机抽样对OTU Table抽平,生成样本序列数一致的OTU Table。序列数小于设定阈值的样本在输出结果中将会被忽略。
输入:
OTU Table文件:
OTU ID Bio1 Bio2 Bio3 Bio4 Bio5 Bio6 Bio7 Bio8 Bio9 Bio10
OTU1 0 0 0 0 0 6 34 104 367 254
OTU2 52 335 18 49 0 0 0 0 0 0
OTU3 0 0 0 0 5 0 0 0 0 0
其他参数默认。
输出:
抽平后的OTU Table文件:
OTU ID Bio1 Bio2 Bio3 Bio4 Bio5 Bio6 Bio7 Bio8 Bio9 Bio10
OTU1 0 0 0 0 0 6 34 70 235 205
OTU2 31 264 18 32 0 0 0 0 0 0
OTU3 0 0 0 0 4 0 0 0 0 0
分析模块引用了mothur(v.1.35.0)的sub.sample命令。
相关文献如下所示:
Schloss, P.D., et al., Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol, 2009. 75(23):7537-41.
The original tools:
Schloss, PD & Handelsman, J. (2006) Introducing SONS, a tool for OTU-based comparisons of membership and structure between microbial communities. Applied and Environmental Microbiology. 72:6773-9.
Schloss, PD & Handelsman, J. (2006). Introducing TreeClimber, a test to compare community structures. Applied and Environmental Microbiology. 72: 2379-84.
Schloss, PD & Handelsman, J. (2005). Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Applied and Environmental Microbiology. 71:1501-6.
Schloss, PD, Larget, BR, & Handelsman J. (2004). Integration of microbial ecology and statistics: a test to compare gene libraries. Applied and Environmental Microbiology. 70:5485-92.